polychrom package
=================


Submodules
----------

.. toctree::

   polychrom.simulation
   polychrom.forcekits
   polychrom.forces
   polychrom.contactmaps
   polychrom.hdf5_format
   polychrom.polymer_analyses
   polychrom.polymerutils
   polychrom.pymol_show
   polychrom.starting_conformations

Module contents
---------------

.. automodule:: polychrom
   :members:
   :undoc-members:
   :show-inheritance:



Structure
---------

Polychrom is an API, and each simulation has to be set up as a Python script. Simulations are done using a :ref:`polychrom-simulation` submodule (:class:`polychrom.simulation.simulation`)